HARP/CRHDプロトコルデータの前処理パイプライン

準備中


(References)

  • Amiez, C., & Petrides, M. (2009). Anatomical organization of the eye fields in the human and non-human primate frontal cortex. Prog Neurobiol, 89(2), 220-230. doi:10.1016/j.pneurobio.2009.07.010
  • Andersson, J. L., Skare, S., & Ashburner, J. (2003). How to correct susceptibility distortions in spin-echo echo-planar images: application to diffusion tensor imaging. Neuroimage, 20(2), 870-888. doi:10.1016/S1053-8119(03)00336-7
  • Andersson, J. L. R., Graham, M. S., Drobnjak, I., Zhang, H., & Campbell, J. (2018). Susceptibility-induced distortion that varies due to motion: Correction in diffusion MR without acquiring additional data. Neuroimage, 171, 277-295. doi:10.1016/j.neuroimage.2017.12.040
  • Andersson, J. L. R., Graham, M. S., Drobnjak, I., Zhang, H., Filippini, N., & Bastiani, M. (2017). Towards a comprehensive framework for movement and distortion correction of diffusion MR images: Within volume movement. Neuroimage, 152, 450-466. doi:10.1016/j.neuroimage.2017.02.085
  • Andersson, J. L. R., & Sotiropoulos, S. N. (2016). An integrated approach to correction for off-resonance effects and subject movement in diffusion MR imaging. Neuroimage, 125, 1063-1078. doi:10.1016/j.neuroimage.2015.10.019
  • Behrens, T. E., Woolrich, M. W., Jenkinson, M., Johansen-Berg, H., Nunes, R. G., Clare, S., . . . Smith, S. M. (2003). Characterization and propagation of uncertainty in diffusion-weighted MR imaging. Magn Reson Med, 50(5), 1077-1088. doi:10.1002/mrm.10609
  • Coalson, T. S., Van Essen, D. C., & Glasser, M. F. (2018). The impact of traditional neuroimaging methods on the spatial localization of cortical areas. Proc Natl Acad Sci U S A, 115(27), E6356-E6365. doi:10.1073/pnas.1801582115
  • Donahue, C. J., Sotiropoulos, S. N., Jbabdi, S., Hernandez-Fernandez, M., Behrens, T. E., Dyrby, T. B., . . . Glasser, M. F. (2016). Using Diffusion Tractography to Predict Cortical Connection Strength and Distance: A Quantitative Comparison with Tracers in the Monkey. J Neurosci, 36(25), 6758-6770. doi:10.1523/JNEUROSCI.0493-16.2016
  • Fischl, B. (2012). FreeSurfer. Neuroimage, 62(2), 774-781. doi:10.1016/j.neuroimage.2012.01.021
  • Fischl, B., & Dale, A. M. (2000). Measuring the thickness of the human cerebral cortex from magnetic resonance images. Proc Natl Acad Sci U S A, 97(20), 11050-11055. doi:10.1073/pnas.200033797
  • Fukutomi, H., Glasser, M. F., Zhang, H., Autio, J. A., Coalson, T. S., Okada, T., . . . Hayashi, T. (2018). Neurite imaging reveals microstructural variations in human cerebral cortical gray matter. Neuroimage, 182, 488-499. doi:10.1016/j.neuroimage.2018.02.017
  • Glasser, M. F., Coalson, T. S., Robinson, E. C., Hacker, C. D., Harwell, J., Yacoub, E., . . . Van Essen, D. C. (2016). A multi-modal parcellation of human cerebral cortex. Nature, 536(7615), 171-178. doi:10.1038/nature18933
  • Glasser, M. F., Smith, S. M., Marcus, D. S., Andersson, J. L., Auerbach, E. J., Behrens, T. E., . . . Van Essen, D. C. (2016). The Human Connectome Project’s neuroimaging approach. Nat Neurosci, 19(9), 1175-1187. doi:10.1038/nn.4361
  • Glasser, M. F., Sotiropoulos, S. N., Wilson, J. A., Coalson, T. S., Fischl, B., Andersson, J. L., . . . Consortium, W. U.-M. H. (2013). The minimal preprocessing pipelines for the Human Connectome Project. Neuroimage, 80, 105-124. doi:10.1016/j.neuroimage.2013.04.127
  • Glasser, M. F., & Van Essen, D. C. (2011). Mapping human cortical areas in vivo based on myelin content as revealed by T1- and T2-weighted MRI. J Neurosci, 31(32), 11597-11616. doi:10.1523/JNEUROSCI.2180-11.2011
  • Robinson, E. C., Garcia, K., Glasser, M. F., Chen, Z., Coalson, T. S., Makropoulos, A., . . . Rueckert, D. (2018). Multimodal surface matching with higher-order smoothness constraints. Neuroimage, 167, 453-465. doi:10.1016/j.neuroimage.2017.10.037
  • Salimi-Khorshidi, G., Douaud, G., Beckmann, C. F., Glasser, M. F., Griffanti, L., & Smith, S. M. (2014). Automatic denoising of functional MRI data: combining independent component analysis and hierarchical fusion of classifiers. Neuroimage, 90, 449-468. doi:10.1016/j.neuroimage.2013.11.046
  • Sotiropoulos, S. N., Hernandez-Fernandez, M., Vu, A. T., Andersson, J. L., Moeller, S., Yacoub, E., . . . Jbabdi, S. (2016). Fusion in diffusion MRI for improved fibre orientation estimation: An application to the 3T and 7T data of the Human Connectome Project. Neuroimage, 134, 396-409. doi:10.1016/j.neuroimage.2016.04.014
  • Zhang, H., Schneider, T., Wheeler-Kingshott, C. A., & Alexander, D. C. (2012). NODDI: practical in vivo neurite orientation dispersion and density imaging of the human brain. Neuroimage, 61(4), 1000-1016. doi:10.1016/j.neuroimage.2012.03.072
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